Code
Up-to-date, version-controlled copies of the code I work with can be found on my github account (follow the octocat):
I typically use the following languages for the given tasks:
- Mathematica: data visualisation, figures, animations
- Python and Matlab: stochastic simulation, time-series analysis
- XPPAUT: bifurcation analysis
- C: agent based modelling, network simulations
Please get in touch if you would like to use/edit this code for your research, or have a more specific coding request.
Software: ewstools
ewstools is a package written in Python that provides tools to compute early warning signals (EWS) from time-series data.
Installation
Make sure Python 3.7 is installed and enter the following into the command line
pip install ewstools
DemosFor demonstrations/tutorials using ewstools, please refer to these iPython notebooks.
Documentation
Documentation is available on ReadTheDocs.